In the case of incompatibility of these two wills

[Mary Naeem]

Pope Shenouda III

In the case of incompatibility of these two wills, man has to choose between two ways of obedience: either he humbles himself, blaming himself, admitting his error and trying to reform his inner self in order to accept God's will gladly, or forces himself to obey whether or not he understands God's will, whether or not he accepts it from within. The important thing is that he must obey and say to the Lord in every matter: "Your will be done".
However, Jonah could not say to the Lord, "Your will be done". He could not humble himself before the Lord. He could not coerce himself to obedience. Thus God Himself had to intervene as we will see next.